updated: 02.06.2021


List of Publications


11. K. Halabi, I. Mayrose (2021) Mechanisms Underlying Host Range Variation in Flavivirus: From Empirical Knowledge to Predictive Models. J Mol Evol (2021).


10. H. Levi, R. Elkon, R. Shamir (2021) "DOMINO - a novel network-based active module identification algorithm with reduced rate of false calls". Molecular Systems Biology 17:e9593 (2021).


9.  M. Levy, A. Frishberg, I. Gat-Viks (2020) Inferring cellular heterogeneity of associations from single cell genomics. Bioinformatics, Volume 36, Issue 11, June 2020, Pages 3466–3473,


8.  D. Levin,  and  T. Tuller (2020) Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics. PLoS Compt. Biol.,


7. D.D. Erdmann-Pham, K. Dao Duc, and Y.S. Song (2020) The key parameters that govern translation efficiency. Cell Systems, Vol. 10, Issue 2, (2020) 183-192.e6.


6. T. S. Hsieh, C. Cattoglio, E. Slobodyanyuk, A. S. Hansen, O. J. Rando, R. Tjian, X. Darzacq (2020) Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding. Mol Cell. 2020 May 7;78(3):539-553.e8. 


5. H. Wang, L. Pipes, R. Nielsen (2020) Synonymous mutations and the molecular evolution of SARS-CoV-2 origins. Virus Evolution, veaa098, 


4. L. Pipes, H. Wang, J. P. Huelsenbeck, R. Nielsen (2020) Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny. Molecular Biology and Evolution, msaa316,


3. M. Chintalapati  and P. Moorjani (2020) Evolution of the mutation rate across primates. Current Opinion in Genetics & Development, 62, 58-64.


2. T. Kustin and A. Stern (2020) Biased mutation and selection in RNA virusesMolecular Biology and Evolution, msaa247,


1. G. Ling, D. Miller, R. Nielsen, A. Stern (2019) A Bayesian framework for inferring the influence of sequence context on point mutations. Molecular Biology and Evolution, msz248,



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